NanoComp report

Summary statistics

feature
General summary H9_2_1 H9_3_1 H9_4_1 HEYA8_1_1 HEYA8_2_1 HEYA8_3_1
Mean read length 1,475.9 1,475.8 1,490.1 1,495.7 1,493.6 1,491.0
Mean read quality 11.3 11.1 11.2 11.3 11.2 11.0
Median read length 1,201.0 1,209.0 1,219.0 1,215.0 1,218.0 1,212.0
Median read quality 11.9 11.7 11.8 11.9 11.7 11.5
Number of reads 436,799.0 400,022.0 596,962.0 721,591.0 633,047.0 816,041.0
Read length N50 1,774.0 1,770.0 1,788.0 1,820.0 1,814.0 1,816.0
STDEV read length 981.0 971.2 988.9 1,003.6 996.9 999.5
Total bases 644,678,794.0 590,334,838.0 889,547,565.0 1,079,308,757.0 945,502,257.0 1,216,727,216.0
Number, percentage and megabases of reads above quality cutoffs
>Q10 436799 (100.0%) 644.7Mb 400022 (100.0%) 590.3Mb 596962 (100.0%) 889.5Mb 721591 (100.0%) 1079.3Mb 633047 (100.0%) 945.5Mb 816041 (100.0%) 1216.7Mb
>Q15 661 (0.2%) 0.7Mb 321 (0.1%) 0.3Mb 942 (0.2%) 1.0Mb 1512 (0.2%) 1.5Mb 748 (0.1%) 0.7Mb 411 (0.1%) 0.4Mb
>Q20 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q25 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
>Q30 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb 0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 17.4 (873) 17.1 (819) 17.3 (506) 17.0 (551) 17.1 (535) 17.6 (657)
2 16.8 (644) 17.0 (614) 17.2 (544) 16.9 (794) 17.0 (523) 17.3 (613)
3 16.6 (1246) 16.5 (795) 17.0 (508) 16.9 (641) 16.8 (668) 17.2 (631)
4 16.6 (629) 16.4 (554) 16.8 (550) 16.8 (828) 16.7 (582) 17.0 (721)
5 16.6 (505) 16.4 (765) 16.7 (541) 16.8 (1265) 16.6 (652) 16.7 (738)
Top 5 longest reads and their mean basecall quality score
1 14646 (11.7) 14032 (12.1) 14852 (11.9) 14676 (12.9) 14552 (12.6) 14301 (11.9)
2 14558 (12.5) 12730 (12.1) 14827 (12.6) 13996 (12.5) 13388 (12.7) 14249 (12.4)
3 14274 (12.2) 12582 (12.2) 14580 (11.0) 13845 (12.9) 13381 (13.7) 14072 (12.6)
4 14111 (12.6) 12274 (10.3) 14476 (13.0) 13448 (12.5) 13328 (13.3) 13471 (12.3)
5 13259 (12.8) 12184 (12.5) 14273 (10.6) 13350 (13.0) 13300 (11.3) 13345 (12.0)

Plots

Comparing number of reads

Comparing throughput in bases

Comparing read length N50

Comparing read length

Comparing log-transformed read length

Comparing average base call quality score

Histogram of read lengths

Normalized histogram of read lengths

Weighted histogram of read lengths

Histogram of log transformed read lengths

Normalized histogram of log transformed read lengths

Weighted histogram of log transformed read lengths